Christian Henry
Analyst · Cowen
Good afternoon, and thank you for joining us today. I am pleased to be hosting my first earnings call for Pacific Biosciences as the Chief Executive Officer, and I'm excited to share some of the progress we've made in my first 7 weeks. For my prepared remarks, I will briefly review our Q3 financial and business highlights, provide an update on how the COVID-19 pandemic is impacting our business, and finally, give some early impressions as CEO and share our view of the opportunity we have to grow the business. But before I begin, I do want to thank all of the employees of PacBio for their extraordinary effort during the pandemic. During the quarter, we were able to successfully maintain production and continue with our research and development activities without significant disruption from the pandemic. I'll start with an overview of our Q3 2020 financial.
Consumables revenue for the quarter was $8 million, up 66% sequentially from Q2. Most of our customers who had shut down due to the pandemic in the second quarter have reopened. We are pleased to report that system utilization on installed Sequel II systems had returned to levels similar to or even higher than where they were before the pandemic.
Instrument revenue for the quarter was $7.7 million or down 14% sequentially from Q2. As I mentioned in our previous earnings call, we have seen significant headwinds in instrument sales due to the pandemic. Many of our instrument sales opportunities have been delayed as some capital budgets were put on hold in Q2. This impacted new bookings and of course, instrument revenue in Q3.
We believe these delayed system purchases continue to be opportunities, and we've recently seen instrument bookings improving. Additionally, we have a healthy system sales pipeline. However, due to the pandemic, it is difficult to predict how quickly these opportunities will be converted to instrument sales.
Total revenue for the third quarter was $19.1 million, which was up 12% sequentially from Q2. Overall, we were pleased with the total revenue we recorded in Q3 as we met our internal forecast while still navigating through the challenges associated with the pandemic.
We successfully raised $94 million from a follow-on offering we conducted in August and ended the quarter with approximately $209 million in cash and investments, up from the $120 million balance we held at the end of June. The proceeds from the offering will allow us to execute on our 2 core strategic objectives, driving an expansion of our commercial operations and investing more aggressively in product development. Susan will provide more details on the financial metrics later in the call.
Now I'd like to provide a few updates and comments regarding the impact of COVID-19 on our business. As I mentioned earlier, the vast majority of our customers have reopened and utilization of our installed base of Sequel II systems is as high as it was prior to the pandemic. That said, some delays persist in the ramp-up of certain large sequencing projects, such as the All of Us human genome sequencing project in the United States and the Darwin Tree of life plant and animal sequencing project in the United Kingdom. The flow of samples from these projects have been hindered by the pandemic. However, we are seeing signs of this loosening up this quarter, and we believe that we should see a ramp-up of these projects early next year.
With regard to instrument sales in the near term, many customers have delayed capital spending activities and some customers diverted those funds to activities more directly related to near-term COVID response. In a typical third quarter, we would receive orders for new systems from U.S. government-related customers that are looking to spend their capital budgets prior to the end of the government fiscal year. However, due to the pandemic, we did not receive any of those orders in Q3, and it is difficult to predict when those opportunities will actually come. That said, as I said before, our sales pipeline is healthy, and we expect to see an increase in instrument bookings in the fourth quarter.
We will continue to monitor this closely as macroeconomic conditions created by the pandemic may have an extended impact on capital spending. Last month, we announced the launch of the Sequel IIe system, which represents the next instrument evolution based on our SMRT technology. The Sequel IIe system is an exciting new instrument that will make the SMRT technology accessible to more scientists than ever before. The system has significantly increased computational capacity and has been optimized for HiFi sequencing by processing the data on instrument. This eliminates the need for post processing of sequence data and delivers up to a 70% reduction in secondary analysis time.
Additionally, the Sequel IIe system is achieved to -- is designed to achieve up to a 90% reduction in file transfer and data storage needs. The combination of these advancements will substantially reduce the costs associated with compute and data storage and will help accelerate our customers' research. The market has responded enthusiastically to the new system, and we have already received orders. The Sequel II system is priced 5% to 10% higher than the Sequel II -- that is to say the Sequel IIe system is 5% to 10% higher than the Sequel II, and we expect it will be available for shipment this month. Additionally, Sequel II systems in the field can easily be upgraded to the Sequel IIe, which will provide all of our Sequel II customers access to our new capabilities.
With the growing popularity of PacBio HiFi sequencing, we are seeing new opportunities to collaborate with customers who are on the forefront of applying sequencing toward emerging clinical applications. Last month, we announced a collaboration with Children's Mercy Kansas City, a leader in translational research for sick children.
Children's Mercy recently launched a program called Genomic Answers for Kids, which is intended to be a data repository to facilitate the search for answers and novel treatments for pediatric genetic conditions. Their goal is to collect genomic data and health information for 30,000 children and their families over the next several years, ultimately creating a database of nearly 100,000 genomes. Children's Mercy now has 2 Sequel II systems, which they will use to incorporate HiFi sequencing into this effort.
We also recently announced a collaboration with Invitae, focusing on the investigation of clinically relevant molecular targets for use in the development of advanced diagnostic testing for epilepsy. In the first phase of this collaboration, Invitae plans to perform whole-genome sequencing on a large pediatric epilepsy cohort.
Sequencing will be performed using multiple PacBio Sequel II systems. Armed with PacBio HiFi sequencing data, Invitae will work towards generating comprehensive variant profiles to investigate the genetic basis of epilepsy. This research is intended to accelerate Invitae's development of assays to help patients obtain more accurate diagnoses and facilitate improved treatment options based on specific genetic targets.
To summarize, I'm encouraged by our performance in the third quarter. We were able to reach our internal revenue targets growing sequentially over Q2. We also initiated a few important collaborations that support our belief that SMRT sequencing with HiFi reads will be extremely important for clinical research applications. With that, I'd like to turn the call over to Susan, who will provide more details on our Q3 financial results and our outlook for Q4. Susan?