Mike Hunkapiller
Analyst · William Blair
Thanks, Trevin. Good afternoon, and thank you for joining us today. We are pleased with our first quarter results and our continued progress in driving growth in our business. Highlights of our Q1 financial results are as follows: We received orders for 30 Sequel systems and 3 RS II systems during the first quarter. The Sequel system orders came from a broad range of customers and were well distributed across the U.S., Europe and Asia. About half of the new systems ordered represent new PacBio customer sites. We shipped 18 Sequel instruments during the first quarter compared with 10 instruments shipped during Q4.
Total revenue for the first quarter was $19.1 million, up 8% from Q1 2015. We are on target with the revenue forecast for this year. With a significant and growing backlog, we are well positioned to deliver sequential revenue growth throughout the year.
Consumable revenue for the first quarter was $4.6 million, up 8% from Q1 2015. System utilization among RS II users has remained steady. Instrument revenue for the first quarter was $7.8 million, up 11% compared with Q1 2015. We installed a mixture of both RS II and Sequel instruments this past quarter. Going forward, we expect almost all of our new installs to be Sequel systems.
Our gross margin improved from approximately 34% during Q1 last year, up to 50% this year -- this quarter. This largely reflects the higher margin we generate from selling Sequel systems compared to RS II systems. We are pleased to see that we are tracking toward profitability with improved product margins.
Now I'd like to provide an update on our recent Sequel product launch. Demand for the new product continues to be robust. We are pleased with the flow of instrument orders coming in, and the pipeline for new orders is very strong. We are seeing a good mix of new and existing customers interested in acquiring Sequel systems.
Beginning with our initial announcement of the Sequel system, we have said that we planned a controlled ramp-up of instrument system shipments as we deal with the usual issues arising during a complex new product introduction. We've also pointed out that when we're working with a limited supply of the Sequel SMRT Cells until we transition from our low-volume prototype production supplier to our long-term, high-volume supplier scheduled for this summer. While we have ramped up Sequel shipments modestly during Q1, compared to the previous quarter, we have held to our original controlled release plan, limiting both instruments and SMRT Cell shipments. Many of the customers in our backlog would like to get their systems installed earlier, and those with install units would prefer a less restricted supply of SMRT Cells, but in general they're understanding of the process we are employing.
In summary, the Sequel product launch is moving along as we have planned. We have a major software upgrade release scheduled for mid-to late May, and we are on schedule for the summer SMRT Cell supplier transition. The first half of this year is a transition period as we've said before, and we believe we are on track to substantially step up the rate of Sequel instrument and consumable shipments in the second half of the year.
Now turning to some other recent highlights. We were very pleased with the turn out and interest level of customers at the AGBT Conference in February in Florida. More than 40 talks and posters at the conference showcased PacBio sequencing data. We cohosted a workshop with Roche that was attended by over 500 people at the conference. The theme of the workshop was revealing the unknowns in medical research with long-read SMRT sequencing. Speakers from Stanford University; UC, San Diego; Uppsala University and the School of Medicine at Mount Sinai, all presented on how they are using PacBio data to further their research toward improving human health. In the hospitality suites, PacBio had a Sequel demonstration system on display, and Roche had a demo unit, the Sequel-based sequencer of theirs, expected to launch later this year. The plenary sessions were capped off by a presentation by our CSO, Jonas Korlach, who presented early data generated for Sequel system, demonstrating the power of the platform to produce similar long-read lengths and high accuracy achieved to PacBio RS II while generating significantly more data.
On the publications front, we have seen a couple of high-profile papers published in recent issues of Science & Nature that highlight the value of PacBio SMRT sequencing. The Nature article entitled DNA methylation on N(6)-adenine in mammalian embryonic stem cells with lead authors from the Yale School of Medicine, describes how this research group used SMRT sequencing to identify the sites of N6-methyladenine from these cells. Numerous studies employing SMRT sequencing have shown that in bacteria, this epigenetic modification is important, both in regulation of gene expression, resistance to phage infection, and changes in bacterial virulence. Until recently, it had not been widely believed to be important in higher organisms. Last year, 3 studies confirmed its existence in an insect, nematode and green algae genome respectively, with hints that it was involved in gene activation in the species. The most definitive of these studies employed SMRT sequencing. The confirmation in this new Nature paper, this methylation pattern also appears in mammalian stem cells and appears to promote gene silencing, they have significant implications in the fields of epigenetics, stem cell research and developmental biology.
The second publication I'll highlight, entitled Long-read sequence assembly of the gorilla genome, made the cover of the April 1 issue of Science Magazine. Scientists from the University of Washington, McDonnell Genome Institute at Washington University in St. Louis and other institutions use SMRT sequencing to generate a very high-quality assembly of the gorilla genome. An important reference that the gorilla is one of our closest relatives. Previous assemblies of the gorilla genome, created with the combination of short-read and Sanger sequencing still contained over 400,000 gaps with large stretches of missing sequence. The team was able to reduce the fragmentation by over 96% using PacBio long reads and PacBio software tools that have been designed for the assembly of large complex genomes. They also look the structural variation between gorilla and human genomes, finding that 86% of the INDELs and inversion variance detected with PacBio had never been seen before. Such dramatic results from this study led the authors to conclude, "the genome assembly that results from using the long-read data provides a more complete picture of gene content, structural variation and repeat biology, improving population genetic and evolutionary inferences. Long-read sequencing now makes it practical for individual laboratories to generate high-quality reference genomes for complex mammalian genomes."
To conclude my opening remarks with a brief update on our Roche relationship. In addition to coordinating marketing activities with us at AGBT, Roche continues to develop assays in preparation for their Sequel-based product launch scheduled for later this year. Meanwhile, we are working on enhancing our manufacturing and service processes to meet the requirements of the Roche launch.
That concludes my initial remarks. I'll turn it over to Susan to provide more details on our financial results.