Michael W. Hunkapiller
Analyst · William Blair
Thanks, Trevin. Good afternoon, and thank you for joining us today. We are continuing to make progress against the plans we laid out earlier this year. Highlights of our second quarter achievements are as follows. We installed 7 new PacBio RS systems, bringing our installed base up to 66 systems in total. We recorded over $7 million in total revenue with recurring revenue continuing to grow sequentially. We launched our latest software product release on time, which provides an automated way for our customers to detect and analyze base modifications. And finally, we had 3 important scientific papers, 2 published in Nature Biotechnology, and one in BioTechniques, which clearly highlighted the value of the PacBio RS in de novo genome assembly. I'll provide more details on this later in the call. As a reminder, at the beginning of the year, we established a small number of priorities that included: one, improving system reliability and performance; two, delivering a series of product enhancements; three, providing full customer solutions including front-end sample prep and back-end bioinformatics; and four, focusing on the key applications where we have significant value, which are de novo assembly, targeted sequencing and base modification analysis. Regarding system reliability and performance, our C2 released in Q1 has made a big difference in how our customers view their PacBio RS systems. The longer read lengths of 2,500 to 3,000 bases on average and improved consistency and system performance have enabled our customers to do more with their systems, which has generally led to higher system utilization. System reliability improvement is a continuous process, but we've made great strides over the past few months. And our customers have been pleased overall with the improved consistency that they have seen since the first quarter. In the area of product enhancements, we followed up our C2 release in Q1 with an important software release in Q2, which provides customers with the ability to detect and analyze base modifications using the kinetic information captured with the PacBio RS system. When combined with additional secondary analysis tools available on the PacBio DevNet site, researchers can now use this information to study a wide variety of modified bases in various types of organisms. Later this year, we plan on releasing an automated set of secondary analysis tools, which will allow our customers to target specific base modifications such as 6-methylcytosine, 5-methylcytosine and 4-methylcytosine and bacterial genomes. In future software releases, we plan to expand our set of automated tools to target base modifications in larger genomes, including humans. Base modification analysis is an exciting application for us, as we are enabling researchers to expand their studies in epigenetics. During this third quarter, we anticipate launching the automated mag bead station. This product enhancement will deliver multiple benefits. It enables preferential loading of longer DNA fragments. So more of the higher value, long reads are captured with each run. It also significantly reduces the amount of input sample required, which could be critical for experiments where the amount of DNA sample available is small. For example, we expect our customers will be able to generate 10-kilobase-size libraries, using as little as 1 microgram as sample. This is a 5 to 10-fold improvement from where our customers were just a few months ago. As we have spent more time with our customers on sample preparation, we realized the difficulty that some customers are having with "dirty samples." Depending on the organism they are studying, some customers cannot get the sequencing simply because the quality of their samples are poor. The issue is exacerbated when customers want to prepare extra long libraries, which is 10 kb. We expect that our automated mag bead station and make a huge difference in their availability to run experiments because it will reduce the impact of the variability and sample prep while reducing the amount of sample needed for sequencing. Finally, we are continuing to work on improvements to the chemistry which provide our customers with the ability to generate longer read lengths, higher accuracy and higher throughput using the same PacBio RS hardware. While we are not yet ready to announce the next chemistry release, we are seeing results in-house that have roughly doubled the read length we're getting with C2. We expect to start field beta testing this enzyme shortly. All of these product enhancements were previously mentioned on our last call, and we're pleased that they all continue to be on track. Our customers have also expressed their growing confidence in our products as we continue to develop on the promises we made earlier in the year. I should also mention that earlier this week, we announced a collaboration with Imec, who's a leader in nanoscale semiconductor fabrication. The goal of this collaboration is to scale the capacity and throughput of our SMRT technology so that we can continue to expand the applications we can address. Turning now to our progress on customer solutions and applications. We've had a prolific quarter of customer presentations and publications. I'll highlight the 2 recent publications in Nature Biotechnology, which showcase the value of the PacBio RS in de novo genome assembly. In these papers, some of our customers highlight their ability to assemble and finish genomes for the first time using software assembly tools to take advantage of the low reads and random error profile the data generated on the PacBio RS machines. This has raised the awareness of a number of researchers of what they can accomplished with PacBio data. While short read technologies have led to the large-scale sequencing of many organisms researchers have had to settle for partially finished genomes because they generally cannot fully assemble genomes with short pieces of DNA alone. Long read data from PacBio, combined with software assembly tools that are tuned to take advantage of that read length has opened the door to accessing completely assembled genomes. The Nature Biotechnology papers provide evidence of how PacBio technology is emerging as the gold standard for finishing genome assemblies and identifying, annotating and deciphering genomic structures. It was also a busy quarter for customer presentations with the American Society for Microbiology, or ASM, meeting in San Francisco; the European Society of Human Genetics, or ESHG, meeting in Germany; and the Sequencing, Finishing and Analysis in the Future, or SFAF, meeting in Santa Fe, all occurring in June. While there were numerous presentations highlighting PacBio at these meetings, I'll just highlight one made by Eric Schadt about Sinai at the ASM meeting. Eric presents some recent work on whole genome characterization of methyladenine residues from highly virulent strains of E. coli. You may recall that during last year's deadly E. coli outbreak in Germany, Dr. Schadt and his colleagues used the PacBio RS to completely sequence the outbreak strain in 2 days to identify elements that caused the virulence of this strain, including a phage-like element encoding Shiga toxin 2 and antibiotic-resistant plasmins. However, given that similar E. coli strains also containing the Shiga toxin gene were not as virulent as the German outbreak strain. Dr. Schadt and his colleague, Dr. Matt Waldor, at the Harvard Medical School decided to look at the base modifications in the genome of the outbreak strain. Using the unique capabilities of the PacBio RS, Dr. Schadt was able to reanalyze the data generated from the original sequencing effort to detect widespread base modifications present in the bacterial genome. In the outbreak genome approximately 50,000 methyladenine bases were identified. In collaboration with Nobel Laureate Dr. Rich Roberts, Chief Scientific Officer at New England Biolabs, the project team was be able to identify 10 gnome and putative methyltransferases in the bacterial genome, one of which was located in the region of the phage-like element encoded in the Shiga toxin gene and had been thought to be responsible for the increased virulence. Further analysis of expression data of the genes containing the motif, recognized this specific methyltransferase, showed up regulation of genes involving a number of biological pathways, including the pilus pathway, an important mechanism for horizontal gene transfer. So to summarize, using the PacBio RS, Dr. Schadt and his colleagues were not only able to completely sequence the outbreak strain but simultaneously capture base modification data that enabled them to characterize methyladenine residues, identify novel methyltransferases, and thus create hypotheses for their function and role in bacterial virulence in this strain. Dr. Schadt's work is an excellent example of the whole picture that the PacBio RS offers to research scientists when they have a finished genome and the ability to detect and analyze base modifications as well. In terms of customer successes, I'll highlight the recent activities of one of our busier customers, the Los Alamos National Laboratory. Scientists at Los Alamos have migrated the majority of their genome finishing process from Sanger sequencing to PacBio, and a recent publication of BioTechniques explains why. Los Alamos team needed a cost-effective pipeline to take the fragmented genome assemblies produced by short read sequencing technologies and finish them to a quality like the gold standard of Sanger sequencing but without Sanger's high cost. In the BioTechniques publication, they described an approach for pooling over 200 PCR products to cover the gaps and accurately assemble repeat regions using PacBio SMRT sequencing. The author say the key advantages in using PacBio compared to Sanger were significantly lower costs, its ability to close gaps longer than 2.5 kilobases, and its ability to sequence through difficult structures like hairpins and GC-rich regions. This is an excellent example of how PacBio's novel technology delivers unique value to customers in areas that are critical to resolving biological complexity. Now I'd like to briefly address our sales activities. During the second quarter, we only booked one new order for an instrument. We're not expecting to book many of these [ph] systems during the quarter, however. We recognize that this needs to improve, and we believe that it will improve in the quarters to come. We're making more customers successful with the systems each quarter, and we strongly believe that satisfied customers become our best salespeople. We closely track the utilization of our systems in the field, and we have seen an overall increase. Importantly, we are seeing positive momentum in key applications such as microbial assembly. Microbial assembly is a sweet spot for technology as microbes tend to be genetically complex organisms, which are difficult to study with short read technologies. And the throughput of the PacBio RS is sufficient to sequence them very cost effectively. We expect a number of microbial assembly projects at the PacBio RS to increase over time, but we also expect the application space to expand into de novo assembly of larger genomes as we continue to deliver product enhancements and customers become more familiar with the platform. Already, we have customers working in early studies on the genomes of plants, birds, fish, humans and other primates. Over the past several months, I have personally met with many of our customers, and I'm excited to hear about their plans for using their PacBio systems for important applications that they can only achieve with our products. Finally, I am proud to share that David Botstein has joined the PacBio Board of Directors. Dr. Botstein is Director of the Lewis-Sigler Institute for Integrative Genomics and Anthony B. Evnin Professor of Genomics at Princeton University, where he has served since 2003. From 1990 to 2003, he was Chairman of the Department of Genetics at Stanford University. Previously, he was Vice President for Science at Genentech and today serves on Genentech's Scientific Resource Board. He's a member of the National Academy of Sciences and the Institute of Medicine, and he's received numerous awards for his achievements in science. Dr. Botstein has made fundamental contributions to modern genetics, including the discovery of many yeast and bacterial genes and the establishment of key techniques that are commonly used today. In 1980, David and 3 colleagues proposed a method for mapping genes that laid the groundwork for the Human Genome Project. He holds a Ph.D. in Human Genetics from the University of Michigan and an A.B. in BioChemical Sciences from Harvard. David is someone for whom I have the utmost personal and professional respect and I've had the privilege of working with him on scientific projects in the past. He brings a wealth of knowledge and insight to our board. And like me, he believes that our technology can truly make a difference in biology and its many applications. And with that, I'll turn the call over to Susan.